CpcS-III subfamily
Description
Classification proposed by Shen et al. (2008) and Schluchter et al. (2010). None of the strains possessing the cpcS-III gene, including all PEC-containing strains, contains a cpcU-like gene (see phyletic profiles). The X-ray structure of CpcS-III from Thermosynechococcus elongatus BP1 (Tll1699) is available (PDB: 3BDR) and was crystallized as a homodimer. CpcS-III was erroneously called "CpeS1" by Zhao et al. (2007a) and Tu et al. (2008).
Motif
A motif characterising this family is available.
References
- Saunée et al., 2008. Biogenesis of phycobiliproteins: II. CpcS-I and CpcU comprise the heterodimeric bilin lyase that attaches phycocyanobilin to Cys-82 of beta-phycocyanin and Cys-81 of allophycocyanin subunits in Synechococcus sp. PCC 7002 J Biol Chem, 283, 7513-7522.
- Schluchter et al., 2010. Phycobiliprotein Biosynthesis in Cyanobacteria: Structure and Function of Enzymes Involved in Post-translational Modification Adv Exp Med Biol, 675, 211-228.
- Shen et al., 2008. Biogenesis of phycobiliproteins: I. cpcS-I and cpcU mutants of the cyanobacterium Synechococcus sp. PCC 7002 define a heterodimeric phycocyanobilin lyase specific for beta-phycocyanin and allophycocyanin subunits J Biol Chem, 283, 7503-7512.
- Tu et al., 2008. Intermediate binding of phycocyanobilin to the lyase, CpeS1, and transfer to apoprotein Photosynth Res, 95, 163-168.
- Zhao et al., 2007a. Phycobilin:cystein-84 biliprotein lyase, a near-universal lyase for cysteine-84-binding sites in cyanobacterial phycobiliproteins Proc Natl Acad Sci USA, 104, 14300-14305.
- Zhao et al., 2006. Chromophore attachment to phycobiliprotein beta-subunits: phycocyanobilin:cysteine-beta84 phycobiliprotein lyase activity of CpeS-like protein from Anabaena sp. PCC7120 J Biol Chem, 281, 8573-8581.
Showing only sure genes
| Gene | Locus tag | Genbank | Species | Strain | PBP in rods | Pigment type | Remark | Length | Last change |
|---|---|---|---|---|---|---|---|---|---|
| CpcS-III subfamily | alr0617 | NP_484661.1 | Anabaena (Nostoc) sp. | PCC7120 | PC+PEC | 188 | 09-26-2011 | ||
| CpcS-III subfamily | Ava_4549 | YP_325042.1 | Anabaena variabilis | ATCC29413 (PCC7937) | PC+PEC | 188 | 09-27-2011 | ||
| CpcS-III subfamily | Aazo_1709 | YP_003720981.1 | Anabaena (Nostoc) azollae | 0708 | PC+PEC | 191 | 09-26-2011 | ||
| CpcS-III subfamily | Cyan7425_2083 | YP_002482807.1 | Cyanothece sp. | PCC7425 | PC | 1 | 188 | 09-26-2011 | |
| CpcS-III subfamily | FJSC11DRAFT_1071 | ZP_08984865.1 | Fischerella sp. (Mastigocladus laminosus) | JSC-11 | PC+PEC | 187 | 11-04-2011 | ||
| CpcS-III subfamily | MC7420_7485 | ZP_05023633.1 | Microcoleus chthonoplastes | PCC7420 | PC+PEC | 186 | 09-26-2011 | ||
| CpcS-III subfamily | N9414_02356 | ZP_01632464.1 | Nodularia spumigena | CCY9414 | PC | 1 | 188 | 09-26-2011 | |
| CpcS-III subfamily | CYB_2841 | YP_479027.1 | Synechococcus sp. | JA-2-3B'a(2-13) | PC | 1 | 190 | 09-26-2011 | |
| CpcS-III subfamily | CYA_2807 | YP_476172.1 | Synechococcus sp. | JA-3-3Ab | PC | 1 | 187 | 09-26-2011 | |
| CpcS-III subfamily | tll1699 | NP_682489.1 | Thermosynechococcus elongatus | BP-1 | PC | 1 | 3D structure available (pdb:3BDR). N-term shortened (4 aa removed) | 178 | 08-29-2012 |
| CpcS-III subfamily | CRD_00076 | ZP_06303581.1 | Raphidiopsis brookii | D9 | PC | 1 | Contains a group II intron containing an orf (gi|282895443|ref|ZP_06303580.1|) This sequence is the fusion of CRD_00076 and CRD_00074 (KHEGSTVLVTVPDLLKPGEGKLLRE added before CRD_00074) |
197 | 11-02-2011 |
| CpcS-III subfamily | CRC_02172 | ZP_06308247.1 | Cylindrospermopsis raciborskii | CS-505 | PC | 1 | Fusion of CRC_02170 and CRC_02172. Contains a group II intron (same as D9 strain). KHEGSTVLVTVPDLLKPGEGKLLRE added before CRC_02172 | 197 | 12-02-2011 |
| CpcS-III subfamily | GEI7407_2263 | YP_007109790.1 | Geitlerinema sp. | PCC7407 | PC | 186 | 06-20-2013 | ||
| CpcS-III subfamily | Cri9333_3248 | YP_007143590.1 | Crinalium epipsammum | PCC9333 | PC | 186 | 06-20-2013 | ||
| CpcS-III subfamily | Glo7428_4424 | YP_007130027.1 | Gloeocapsa sp. | PCC7428 | PC | 187 | 04-22-2013 | ||
| CpcS-III subfamily | Syn7509DRAFT_00025220 | ZP_21040972.1 | Synechocystis sp. | PCC7509 | PC | 185 | 04-22-2013 | ||
| CpcS-III subfamily | Anacy_0109 | YP_007154628.1 | Anabaena cylindrica | PCC7122 | PC+PEC | 190 | 04-23-2013 | ||
| CpcS-III subfamily | Cylst_0830 | YP_007145836.1 | Cylindrospermum stagnale | PCC7417 | PC+PEC | 191 | 04-23-2013 | ||
| CpcS-III subfamily | Nos7524_3943 | YP_007077313.1 | Nostoc sp. | PCC7524 | PC+PEC | 187 | 04-23-2013 | ||
| CpcS-III subfamily | Riv7116_2426 | YP_007055488.1 | Rivularia sp. | PCC7116 | PC+PEC | 188 | 04-23-2013 | ||
| CpcS-III subfamily | Chro_1676 | YP_007091064.1 | Chroococcidiopsis thermalis | PCC7203 | PC+PEC | 186 | 04-23-2013 | ||
| CpcS-III subfamily | Nos7107_3741 | YP_007051452.1 | Nostoc sp. | PCC7107 | PC+PEC | 187 | 04-29-2013 | ||
| CpcS-III subfamily | Cal7507_3605 | YP_007066831.1 | Calothrix sp. | PCC7507 | PC+PEC | 188 | 04-29-2013 | ||
| CpcS-III subfamily | Fis9431DRAFT_3727 | Fischerella sp. | PCC9431 | PC+PEC | 187 | 06-12-2013 | |||
| CpcS-III subfamily | FIS9605DRAFT_06979 | Fischerella sp. | PCC9605 | PC+PEC | 188 | 06-12-2013 | |||
| CpcS-III subfamily | FisPCC73103_3408 | Fischerella muscicola | PCC73103 (SAG 1427-1) | PC+PEC | 187 | 06-12-2013 | |||
| CpcS-III subfamily | Scytonema_PCC7110_joined_11887 | Scytonema hofmanni | PCC7110 | PC+PEC | 189 | 06-12-2013 | |||
| CpcS-III subfamily | PCC9339DRAFT_01730 | Fischerella sp. | PCC9339 | PC+PEC | 187 | 06-12-2013 | |||
| CpcS-III subfamily | Ana7108_2980 | Anabaena sp. | PCC7108 | PC+PEC | 191 | 06-12-2013 | |||
| CpcS-III subfamily | Chloroglopsis_PCC9212_joined_7598 | Chlorogloeopsis sp. | PCC9212 | PC+PEC | 189 | 06-12-2013 | |||
| CpcS-III subfamily | UYC_05286 | Chlorogloeopsis fritschii | PCC6912 | PC+PEC | 189 | 06-12-2013 | |||
| CpcS-III subfamily | FisPCC7414_4393 | Fischerella muscicola | PCC7414 | PC+PEC | 187 | 06-12-2013 | |||
| CpcS-III subfamily | Fischerella_sp._PCC7521_3615 | Fischerella thermalis | PCC7521 | PC+PEC | 187 | 06-12-2013 | |||
| CpcS-III subfamily | Syn6312_0613 | YP_007060377.1 | Synechococcus sp. | PCC6312 | PC | 186 | 06-12-2013 | ||
| CpcS-III subfamily | Syn7502_02665 | YP_007106758.1 | Synechococcus sp. | PCC7502 | PC | 172 | 06-20-2013 |
Model strains, Marine strains
Last update: 20 Apr 2023 15:05:51
